Field Guide

HIPAA Compliance: A Practitioner's Guide

The short version

HIPAA is built on three rules. The Privacy Rule controls how protected health information may be used and disclosed and gives patients rights over it. The Security Rule protects the electronic version of that information through administrative, physical, and technical safeguards. The Breach Notification Rule sets what an entity must do, and within what period, when protected information is compromised. The regime binds two groups: covered entities and the business associates that handle data for them. The risk analysis is the obligation examiners test first, and the rest of the program is built on its output.

HIPAA is the U.S. federal regime, codified at 45 CFR Parts 160 and 164, that governs how protected health information is used, disclosed, secured, and reported on when compromised. It binds covered entities and their business associates, and it operates through three rules: the Privacy Rule, the Security Rule, and the Breach Notification Rule. Compliance is evidenced by documentation rather than by assertion, and the documentation examiners request first is the risk analysis.

The sections below cover who the regime binds, the three rules that make it up, the safeguards the Security Rule requires, the risk analysis that anchors the program, the business associate agreements that extend the obligations down the supply chain, the notification timelines that run from discovery of a breach, and the enforcement structure. The grounding is 45 CFR Part 160 and Part 164, together with the HHS Office for Civil Rights audit protocol that examiners test against.

Who has to comply

HIPAA does not apply to everyone who touches health information. It applies to two defined groups, and an organization's classification within them is settled first, because the obligations differ.

Covered entities

A covered entity is one of three things: a health plan, a healthcare clearinghouse, or a healthcare provider that transmits health information electronically in connection with a covered transaction such as a claim or an eligibility check. A solo physician who bills electronically is a covered entity. A hospital is a covered entity. A health insurer is a covered entity. The electronic-transmission trigger is what pulls most providers in.

Business associates

A business associate is any person or organization that creates, receives, maintains, or transmits protected health information on behalf of a covered entity to perform a function or service. Claims processors, cloud hosting providers, billing companies, transcription services, analytics vendors, and IT firms with access to systems holding health information are common examples. A business associate is directly liable for the Security Rule and for parts of the Privacy and Breach Notification Rules, not merely contractually liable to the covered entity.

One level down

A subcontractor that creates, receives, maintains, or transmits protected health information for a business associate is itself a business associate. The obligations flow all the way down the chain. A vendor cannot shed HIPAA by outsourcing the work to a fourth party.

The information HIPAA protects

HIPAA protects protected health information, or PHI: individually identifiable health information held or transmitted by a covered entity or business associate, in any form, whether on paper, spoken, or electronic. When that information is in electronic form, it is electronic protected health information, or ePHI, and the Security Rule attaches to it specifically. The first practical step in a HIPAA program is a map of where this information lives and moves across the entity's systems and media. That map is the predicate for everything that follows, and for the risk analysis in particular.

The three rules

HIPAA operates through three rules under 45 CFR Part 164, each with a distinct scope.

RuleCitationWhat it governs
Privacy RuleSubpart EHow protected health information in any form may be used and disclosed, the minimum-necessary standard, and the rights patients hold over their own information, including access and amendment.
Security RuleSubpart CThe administrative, physical, and technical safeguards that protect the confidentiality, integrity, and availability of electronic protected health information specifically.
Breach Notification RuleSubpart DWhat an entity must do, and by when, when unsecured protected health information is breached: who to notify, how, and within what timelines.

The Privacy Rule and minimum necessary

The Privacy Rule sets the conditions under which protected information may be used and disclosed, and it carries the minimum necessary standard. A use, disclosure, or request of protected health information is limited to the least amount needed to accomplish the purpose. There are carve-outs, including disclosures to the patient and disclosures for treatment, but the default posture is restraint. The Privacy Rule also grants patients rights, including the right to access their own records and to request corrections.

The Security Rule safeguards

The Security Rule is where most of the engineering work sits. It organizes its requirements into three families of safeguards under 45 CFR 164.308, 164.310, and 164.312, plus organizational and documentation requirements. Each requirement is a standard, and most standards carry implementation specifications.

Administrative safeguards (164.308)

Administrative safeguards are the policies, procedures, and management actions that govern the security program. They are the largest family. They include the security management process and its risk analysis and risk management specifications, assigned security responsibility, workforce security, information access management, security awareness and training, security incident procedures, the contingency plan, periodic evaluation, and the requirement to have business associate agreements in place.

Physical safeguards (164.310)

Physical safeguards protect the facilities, equipment, and media where electronic protected health information lives. They cover facility access controls, workstation use and workstation security, and device and media controls, including the disposal and re-use of media that has held protected information. A hard drive that leaves the building without being wiped is a physical-safeguard failure.

Technical safeguards (164.312)

Technical safeguards are the technology controls applied to the information itself and to the systems that hold it. They cover access control with unique user identification and emergency access, audit controls that record and examine activity, integrity controls that protect information from improper alteration or destruction, person or entity authentication, and transmission security for information moving across networks.

Required versus addressable

Within the Security Rule, every implementation specification is labeled either required or addressable. The two labels carry different obligations.

LabelWhat it means
Required (R)The entity must implement the specification as written. There is no flexibility, and the determination is binary against the standard.
Addressable (A)The entity assesses whether the specification is reasonable and appropriate in its environment, then either implements it, implements an equivalent alternative, or documents why neither is reasonable and how the standard is still met. Addressable is not a discretionary category: an addressable specification passed over with no documented analysis is a violation, and the missing analysis is the finding.
A note on what is changing

A proposed update to the Security Rule, issued by OCR in December 2024 and published in the Federal Register in January 2025 with comments closing in March 2025, would remove the addressable category and make nearly all implementation specifications required, while making controls like multi-factor authentication and encryption of electronic protected health information mandatory. As of this writing that rule is proposed, not finalized, so the required-versus-addressable logic above remains current law. Confirm the current text against the Code of Federal Regulations before relying on it in a high-stakes matter.

Separately, a 2024 rule on reproductive health information, which had added an attestation requirement for certain disclosures, was vacated nationwide by a federal court on June 18, 2025, and the appeal was dropped, so that rule and its attestation requirement are no longer in effect. Reproductive health information remains governed by the general HIPAA rules and by applicable state law.

Risk analysis under 164.308(a)(1)(ii)(A)

The risk analysis at 45 CFR 164.308(a)(1)(ii)(A) is a required implementation specification, and it is the deficiency the Office for Civil Rights cites most often in enforcement. The standard asks for an accurate and thorough assessment of the potential risks and vulnerabilities to the confidentiality, integrity, and availability of all electronic protected health information the entity creates, receives, maintains, or transmits.

The words "accurate and thorough" and "all" carry the weight. A risk analysis that covers one system and ignores three others is not thorough. One that was done two years ago and never revisited after a major system change is not accurate anymore. The risk analysis feeds the risk management specification at 164.308(a)(1)(ii)(B), which requires implementing measures sufficient to reduce the identified risks to a reasonable and appropriate level. The two move together: the analysis names the risks, and the management plan has to trace back to them.

Business associate agreements

A business associate agreement, or BAA, is the contract that binds a vendor handling protected health information to safeguard it and to use it only as permitted. Under 45 CFR 164.308(b) and 164.314(a), a covered entity must have a compliant BAA in place before it lets a business associate handle protected information, and a business associate must have one with each of its subcontractors. The agreement establishes the permitted uses, requires the safeguards, obligates breach reporting up the chain, and addresses the return or destruction of information when the relationship ends. A missing or stale BAA is a recurring enforcement finding, because it is easy to verify and easy to neglect.

Breach notification timelines

The Breach Notification Rule, 45 CFR 164.400 through 164.414, sets the clock that starts when unsecured protected health information is compromised. The timelines are specific, and the size of the breach determines who must be notified.

Who notifies whomDeadline
Covered entity to affected individualsWithout unreasonable delay, and no later than 60 calendar days after discovery of the breach.
Covered entity to HHS, large breaches (500 or more)Contemporaneously with notice to individuals, within the same 60-day window.
Covered entity to media, large breaches (500 or more in a state or jurisdiction)To prominent media outlets serving the area, without unreasonable delay and no later than 60 days after discovery.
Covered entity to HHS, smaller breaches (fewer than 500)In an annual log, no later than 60 days after the end of the calendar year in which the breach was discovered.
Business associate to covered entityWithout unreasonable delay and no later than 60 days after discovery, so the covered entity can meet its own deadlines.

An impermissible use or disclosure of protected health information is presumed to be a breach unless the entity can show a low probability that the information was compromised, judged through a risk assessment that weighs the nature of the information, who used or received it, whether it was actually acquired or viewed, and the extent to which the risk has been mitigated.

Enforcement and penalties

The Office for Civil Rights enforces HIPAA, through complaint investigations, compliance reviews, and a periodic audit program. Civil money penalties follow a four-tier structure keyed to culpability.

TierCulpability
1The entity did not know, and by exercising reasonable diligence would not have known, of the violation.
2The violation was due to reasonable cause and not willful neglect.
3Willful neglect, but the violation was corrected within the required period.
4Willful neglect that was not timely corrected.

Each tier carries a higher per-violation minimum, and penalties are subject to an annual cap per identical provision. The dollar figures are adjusted for inflation, so the current amounts are confirmed against the published penalty schedule rather than recalled. Penalties for willful neglect are mandatory. Beyond civil penalties, the Department of Justice can pursue criminal penalties, including fines and imprisonment, for knowing wrongful disclosure of protected health information, with the severity rising when the conduct involves intent to sell or use the information for gain.

The current OCR audit cycle is weighted toward the Security Rule provisions most relevant to hacking and ransomware: risk analysis, risk management, access control, audit controls, and contingency planning. The underlying requirements are unchanged; the shift is in the order in which an examiner reaches them.

A HIPAA readiness checklist

The items below are the conditions a program in good order can evidence.

The evidentiary posture HIPAA calls for is a documented one: a map of where the data lives, an assessment of what could go wrong, controls that trace to the identified risks, and a retained record an examiner can read. For the terms used throughout this guide, see the HIPAA glossary.

Common questions

Who has to comply with HIPAA?
HIPAA applies to covered entities and to their business associates. Covered entities are health plans, healthcare clearinghouses, and healthcare providers that transmit health information electronically in connection with a covered transaction. A business associate is any person or organization that creates, receives, maintains, or transmits protected health information on behalf of a covered entity. A subcontractor that handles that information for a business associate is itself a business associate and carries the same obligations.
What is the difference between the Privacy Rule and the Security Rule?
The Privacy Rule governs how protected health information in any form may be used and disclosed, and it gives patients rights over their information. The Security Rule is narrower: it applies only to protected health information held or transmitted in electronic form, and it requires administrative, physical, and technical safeguards to protect that electronic information. The Privacy Rule covers the what and why of disclosure. The Security Rule covers how electronic information is protected.
What is a HIPAA risk analysis?
A risk analysis under 45 CFR 164.308(a)(1)(ii)(A) is an accurate and thorough assessment of the potential risks and vulnerabilities to the confidentiality, integrity, and availability of electronic protected health information that an entity creates, receives, maintains, or transmits. It is a required implementation specification, and it is the deficiency the Office for Civil Rights cites most often. A risk analysis has to cover all electronic protected health information across every system and medium, and it has to be updated when the environment changes.
How fast does a HIPAA breach have to be reported?
A covered entity must notify affected individuals without unreasonable delay and no later than 60 calendar days after discovery of a breach. If a breach affects 500 or more residents of a state or jurisdiction, the covered entity must also notify prominent media outlets within the same 60-day window and notify the HHS Secretary contemporaneously. Breaches affecting fewer than 500 individuals are reported to the Secretary in an annual log, no later than 60 days after the end of the calendar year. A business associate must notify the covered entity without unreasonable delay and no later than 60 days after discovery.
What are the penalties for a HIPAA violation?
Civil money penalties run on a four-tier structure keyed to culpability, from violations the entity did not know about and could not have known about, up to willful neglect that is not corrected. Each tier carries a higher per-violation minimum, subject to an annual cap per identical provision. The amounts are adjusted for inflation, so confirm the current figures against the published schedule. Penalties for willful neglect are mandatory. The Department of Justice can also pursue criminal penalties, including fines and imprisonment, for knowing wrongful disclosure of protected health information.
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Primary sources

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